Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01204.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 812

Length: 1354
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38


Found at i:291 original size:57 final size:57

Alignment explanation


    Indices: 173--291  Score: 139
    Period size: 57  Copynumber: 2.1  Consensus size: 57

        163 GTTAGGTCAA

                  *   *                  * *      *          *  *   *
        173 ATCTTGTCTTTTTAATCCCTTGATACTTGTTTCCAGTTCTGCCCTTAATTTTTGCAT
          1 ATCTTGCCTTCTTAATCCCTTGATACTTGCTGCCAGTTATGCCCTTAATCTTGGCAG

                                    *                  *  *          
        230 ATCTTGCCTTCTTAATCCCTTGATCCTTGCTGCCAGTTATGCCTTTGATCTTGGCAG
          1 ATCTTGCCTTCTTAATCCCTTGATACTTGCTGCCAGTTATGCCCTTAATCTTGGCAG

                 
        287 ATCTT
          1 ATCTT

        292 TTGTTGTTTG


Statistics
Matches: 51,  Mismatches: 11, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  57   51  1.00

ACGTcount: A:0.15, C:0.25, G:0.13, T:0.46


Consensus pattern (57 bp):   
ATCTTGCCTTCTTAATCCCTTGATACTTGCTGCCAGTTATGCCCTTAATCTTGGCAG
Done.