Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01207.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 441

Length: 735
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32


Found at i:90 original size:15 final size:15

Alignment explanation


    Indices: 70--100  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

         60 CTATTTTCTG

                  *        
         70 TTTTTTTTTCCTTTA
          1 TTTTTTATTCCTTTA

                           
         85 TTTTTTATTCCTTTA
          1 TTTTTTATTCCTTTA

             
        100 T
          1 T

        101 CAGCAGCACT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77


Consensus pattern (15 bp):   
TTTTTTATTCCTTTA
Done.