Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02498.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 925

Length: 1543
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.24


Found at i:74 original size:45 final size:45

Alignment explanation


    Indices: 1--115  Score: 151
    Period size: 45  Copynumber: 2.6  Consensus size: 45

                *   *           *             *  **      
          1 AAGATAAACGAGGATGAGAACCAAGAACGAAAAGCAATGGACAAG
          1 AAGAGAAAAGAGGATGAGAAGCAAGAACGAAAAGAAAAAGACAAG

                                                     *   
         46 AAGAGAAAAGAGGATGAGAAGCAAGAACGAAAAGAAAAAGAGAAG
          1 AAGAGAAAAGAGGATGAGAAGCAAGAACGAAAAGAAAAAGACAAG

                   *                  
         91 AAGAGAATAGAGGATGAGAAG-AAGA
          1 AAGAGAAAAGAGGATGAGAAGCAAGA

        116 GAGGAAAGCT


Statistics
Matches: 62,  Mismatches: 8, Indels: 1
        0.87            0.11        0.01

Matches are distributed among these distances:
  44    4  0.06
  45   58  0.94

ACGTcount: A:0.57, C:0.07, G:0.30, T:0.05


Consensus pattern (45 bp):   
AAGAGAAAAGAGGATGAGAAGCAAGAACGAAAAGAAAAAGACAAG
Done.