Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01219.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4919
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32


Found at i:1720 original size:239 final size:238

Alignment explanation


    Indices: 1302--1767  Score: 691
    Period size: 239  Copynumber: 2.0  Consensus size: 238

       1292 TTGGCTACAG

                    *                   *             *                      
       1302 TTTTATTTTAAGATGCATACTGGCATGCTATTTCTACTTAAGTAGCAAATGCTGAGGGGGTAAAC
          1 TTTTATTTGAAGATGCATACTGGCATGCGATTTCTACTTAAGCAGCAAATGCTGAGGGGGTAAAC

                 * *      *                           * * *                  
       1367 ATAGATATAAGTATTGTACTATGTCTAATTGGATTATGTATTTATTTATCCGTAACTTGTATGTC
         66 ATAGACACAAGTATCGTACTATGTCTAATTGGATTATGTATTAAATGATCCGTAACTTGTATGTC

                          * *                                     *          
       1432 ACATCATACTTATTTTGTGTGCTTGGATTTCATCGCACTTACAGTTAGTTGTCATTAGTAATTTT
        131 ACATCATACTTATTCTATGTGCTTGGATTTCATCGCACTTACAGTTAGTTGTCACTAGTAATTTT

                                                       
       1497 CCTGATATCCTAAGTCCAAACTAGATGTACCAGTTGACTAAAA
        196 CCTGATATCCTAAGTCCAAACTAGATGTACCAGTTGACTAAAA

                           **                                  *             
       1540 TTTTATTTGAAGATGTGTACTGGCATGCGATTTCTACTTAAGCAGCAAATGTTGAGGGGGTTAAA
          1 TTTTATTTGAAGATGCATACTGGCATGCGATTTCTACTTAAGCAGCAAATGCTGAGGGGG-TAAA

                              *                                 *            
       1605 CATAGACACAAGTATCGTGCTACT-TCTAATTGGATTATGTATTAAATGATCTGTAACTTGTATG
         65 CATAGACACAAGTATCGTACTA-TGTCTAATTGGATTATGTATTAAATGATCCGTAACTTGTATG

                      *                        *                   *      *  
       1669 TCACATCATATTTATTCTATGTGCTTGGATTTCATTGCACTTACAGTTAGTTGTCGCTAGTATTT
        129 TCACATCATACTTATTCTATGTGCTTGGATTTCATCGCACTTACAGTTAGTTGTCACTAGTAATT

              *   *            *              
       1734 TTTCTGTTATCCTAAGTCCGAACTAGATGTACCA
        194 TTCCTGATATCCTAAGTCCAAACTAGATGTACCA

       1768 TTTTACTTAG


Statistics
Matches: 202,  Mismatches: 24, Indels: 3
        0.88            0.10        0.01

Matches are distributed among these distances:
 238   54  0.27
 239  147  0.73
 240    1  0.00

ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39


Consensus pattern (238 bp):   
TTTTATTTGAAGATGCATACTGGCATGCGATTTCTACTTAAGCAGCAAATGCTGAGGGGGTAAAC
ATAGACACAAGTATCGTACTATGTCTAATTGGATTATGTATTAAATGATCCGTAACTTGTATGTC
ACATCATACTTATTCTATGTGCTTGGATTTCATCGCACTTACAGTTAGTTGTCACTAGTAATTTT
CCTGATATCCTAAGTCCAAACTAGATGTACCAGTTGACTAAAA
Done.