Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02500.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1918
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27


Found at i:227 original size:21 final size:21

Alignment explanation


    Indices: 203--249  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        193 AATTGATCTA

                    *        *   
        203 AAAAAGAGCAAGAAAGACAAG
          1 AAAAAGAGAAAGAAAGAAAAG

                  *              
        224 AAAAAGCGAAAGAAAGAAAAG
          1 AAAAAGAGAAAGAAAGAAAAG

            *    
        245 GAAAA
          1 AAAAA

        250 CAACGAAGGT


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.70, C:0.06, G:0.23, T:0.00


Consensus pattern (21 bp):   
AAAAAGAGAAAGAAAGAAAAG
Done.