Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01229.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7022
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:3579 original size:69 final size:69

Alignment explanation


    Indices: 3431--3569  Score: 251
    Period size: 69  Copynumber: 2.0  Consensus size: 69

       3421 CAAGACTCTA

                     *   *                                                   
       3431 TCAGCCCTACCACCACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
          1 TCAGCCCTATCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA

                
       3496 CCTG
         66 CCTG

                                                              *              
       3500 TCAGCCCTATCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTGTTCCTGTTTTGGAA
          1 TCAGCCCTATCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA

                
       3565 CCTG
         66 CCTG

             
       3569 T
          1 T

       3570 TTTTCCTATC


Statistics
Matches: 67,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  69   67  1.00

ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27


Consensus pattern (69 bp):   
TCAGCCCTATCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
CCTG
Done.