Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01230.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3752
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:1546 original size:70 final size:70

Alignment explanation


    Indices: 1433--1571  Score: 260
    Period size: 70  Copynumber: 2.0  Consensus size: 70

       1423 CCTTAATGTT

                                           *                                 
       1433 TTGCTTAACATGTTTCTTTTATGTTAAAGTTTATCTAAATAACATTTTGGCCTAGTACCTTTTTA
          1 TTGCTTAACATGTTTCTTTTATGTTAAAGTTGATCTAAATAACATTTTGGCCTAGTACCTTTTTA

                 
       1498 CTTTA
         66 CTTTA

                                                                  *          
       1503 TTGCTTAACATGTTTCTTTTATGTTAAAGTTGATCTAAATAACATTTTGGCCTATTACCTTTTTA
          1 TTGCTTAACATGTTTCTTTTATGTTAAAGTTGATCTAAATAACATTTTGGCCTAGTACCTTTTTA

                
       1568 CTTT
         66 CTTT

       1572 GTTCTACTAA


Statistics
Matches: 67,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  70   67  1.00

ACGTcount: A:0.25, C:0.14, G:0.10, T:0.50


Consensus pattern (70 bp):   
TTGCTTAACATGTTTCTTTTATGTTAAAGTTGATCTAAATAACATTTTGGCCTAGTACCTTTTTA
CTTTA
Done.