Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01239.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3424
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:1867 original size:18 final size:18

Alignment explanation


    Indices: 1843--1898  Score: 103
    Period size: 18  Copynumber: 3.1  Consensus size: 18

       1833 ATGGGGTAAT

                              
       1843 AGGCCTAGTGATTACTCC
          1 AGGCCTAGTGATTACTCC

            *                 
       1861 CGGCCTAGTGATTACTCC
          1 AGGCCTAGTGATTACTCC

                              
       1879 AGGCCTAGTGATTACTCC
          1 AGGCCTAGTGATTACTCC

              
       1897 AG
          1 AG

       1899 ATGGGGTTCT


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   36  1.00

ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27


Consensus pattern (18 bp):   
AGGCCTAGTGATTACTCC
Done.