Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01239.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3194
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:1752 original size:18 final size:18

Alignment explanation


    Indices: 1728--1783  Score: 103
    Period size: 18  Copynumber: 3.1  Consensus size: 18

       1718 ATGGGGTAAT

                              
       1728 AGGCCTAGTGATTACTCC
          1 AGGCCTAGTGATTACTCC

            *                 
       1746 CGGCCTAGTGATTACTCC
          1 AGGCCTAGTGATTACTCC

                              
       1764 AGGCCTAGTGATTACTCC
          1 AGGCCTAGTGATTACTCC

              
       1782 AG
          1 AG

       1784 ATGGGGTTCT


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   36  1.00

ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27


Consensus pattern (18 bp):   
AGGCCTAGTGATTACTCC
Done.