Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02502.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 847

Length: 1412
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26


Found at i:159 original size:12 final size:12

Alignment explanation


    Indices: 142--168  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        132 AGTTTTCTAC

                        
        142 AGAACTAGCAAG
          1 AGAACTAGCAAG

                        
        154 AGAACTAGCAAG
          1 AGAACTAGCAAG

               
        166 AGA
          1 AGA

        169 GGTGGCAGCA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.52, C:0.15, G:0.26, T:0.07


Consensus pattern (12 bp):   
AGAACTAGCAAG
Done.