Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01244.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2200
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27


Found at i:1230 original size:9 final size:9

Alignment explanation


    Indices: 1216--1255  Score: 53
    Period size: 9  Copynumber: 4.4  Consensus size: 9

       1206 GGAAAGGGAG

                    *
       1216 GGTGGTAGT
          1 GGTGGTAGA

                  *  
       1225 GGTGGTGGA
          1 GGTGGTAGA

                     
       1234 GGTGGTAGA
          1 GGTGGTAGA

                 *   
       1243 GGTGGCAGA
          1 GGTGGTAGA

                
       1252 GGTG
          1 GGTG

       1256 TTTGTATTGG


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   9   27  1.00

ACGTcount: A:0.15, C:0.03, G:0.60, T:0.23


Consensus pattern (9 bp):   
GGTGGTAGA

Done.