Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01245.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1692
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28


Found at i:217 original size:9 final size:9

Alignment explanation


    Indices: 203--242  Score: 53
    Period size: 9  Copynumber: 4.4  Consensus size: 9

        193 CCAATACAAA

                   * 
        203 CACCTCTGC
          1 CACCTCTAC

                     
        212 CACCTCTAC
          1 CACCTCTAC

                  *  
        221 CACCTCCAC
          1 CACCTCTAC

                *    
        230 CACCACTAC
          1 CACCTCTAC

                
        239 CACC
          1 CACC

        243 CTCCCTTTCC


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   9   27  1.00

ACGTcount: A:0.23, C:0.60, G:0.03, T:0.15


Consensus pattern (9 bp):   
CACCTCTAC
Done.