Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01253.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2385
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.34


Found at i:1930 original size:100 final size:98

Alignment explanation


    Indices: 1757--1941  Score: 298
    Period size: 100  Copynumber: 1.9  Consensus size: 98

       1747 TTGGCAATTG

                  *                                        **                
       1757 AGGATGTATACTGATTCTGGTTTTGTATATATTTGTAATATGTCAATCTACTATTTCATTTTAGG
          1 AGGATGGATACTGATTCTGGTTTTGTATATATTTGTAATATGTCAATAGACTATTTCATTTTAGG

                                               
       1822 CTTTATTTCATTTTCCTTTTTTTGGAGTCAAGTTT
         66 CTTTATTTC-TTTT-CTTTTTTTGGAGTCAAGTTT

                         *                                   *            *  
       1857 AGGATGGATACTGGTTCTGGTTTTGTATATATTTGTAATATGTCAATAGCCTATTTCATTTTTGG
          1 AGGATGGATACTGATTCTGGTTTTGTATATATTTGTAATATGTCAATAGACTATTTCATTTTAGG

                                
       1922 CTTTATTTCTTTTCTTTTTT
         66 CTTTATTTCTTTTCTTTTTT

       1942 CTTTTGGTAA


Statistics
Matches: 79,  Mismatches: 6, Indels: 2
        0.91            0.07        0.02

Matches are distributed among these distances:
  98    7  0.09
  99    4  0.05
 100   68  0.86

ACGTcount: A:0.21, C:0.11, G:0.16, T:0.53


Consensus pattern (98 bp):   
AGGATGGATACTGATTCTGGTTTTGTATATATTTGTAATATGTCAATAGACTATTTCATTTTAGG
CTTTATTTCTTTTCTTTTTTTGGAGTCAAGTTT
Done.