Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01264.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3956
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30


Found at i:415 original size:3 final size:3

Alignment explanation


    Indices: 383--436  Score: 65
    Period size: 3  Copynumber: 17.7  Consensus size: 3

        373 CTCGAGGCAA

                                      *    *                             
        383 TCT TCT TCAT TCT T-T ATCT CCT TTT TCT TCT TCT TCT TCT TCT TCT
          1 TCT TCT TC-T TCT TCT -TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT

                      
        429 TCT TCT TC
          1 TCT TCT TC

        437 AGTGCTGCAA


Statistics
Matches: 44,  Mismatches: 4, Indels: 6
        0.81            0.07        0.11

Matches are distributed among these distances:
   2    1  0.02
   3   39  0.89
   4    4  0.09

ACGTcount: A:0.04, C:0.31, G:0.00, T:0.65


Consensus pattern (3 bp):   
TCT

Done.