Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g01271.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3155
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Found at i:1858 original size:342 final size:342
Alignment explanation
Indices: 1225--1910 Score: 1025
Period size: 342 Copynumber: 2.0 Consensus size: 342
1215 TAGAAGCTAA
1225 TGGTTTTGGTGATTCAAATAAAGATGCATGCTTTGAAGAAAAAGGTGGCTGGAGAAGCACACACT
1 TGGTTTTGGTGATTCAAATAAAGATGCATGCTTTGAAGAAAAAGGTGGCTGGAGAAGCACACACT
* * *
1290 ACCACTCAGACAATGCAGATCAGGCAGTTGGACATCATTTCAGCAGATTTAATAATATACAATGT
66 ACCACTCACACAATGCAGATCAGACAGTTGGACATCATTTCAGCAGATTTAATAATATACAATGC
* * * *
1355 CAAGTGAGTCAACAAAATGAAAATATTGTTGTGAAAAGTGATAATGCTAGTGGAGGAAACAATAG
131 CAAGTGAGTCAACAAAATGAAAATATAGTTGTGAAAAGAGATAATGCTAGTGGAGAAAACAACAG
* ** *
1420 GACCACATGTGATGGTCCAGAAAGTCATGATGCAACTGAAAAAGCTGGTGTGATTGTCTCAAAAT
196 GACCACATGTGATGGTCCAGAAAATCATGATGCAACTGAAAAAGCTCCTATGATTGTCTCAAAAT
* * *
1485 TCAACCGAAGATGTGAACCTTCTAGTGCAAAAACCATACTGCCTAAAAGGCAAACAAAACATGTA
261 TCAACCGAAGAAGTGAACCTTCTAGTGCAAAAAACATACTGCCTAAAAGGCAAACAAAACATGCA
*
1550 TTGAACTCAAGAAATAG
326 TTAAACTCAAGAAATAG
* * *
1567 TGGTTTTGGTGATTCAAATAGAGATGCATGCTTTGAAGGAAAAGGTGGCTGGAGAAGCACACATT
1 TGGTTTTGGTGATTCAAATAAAGATGCATGCTTTGAAGAAAAAGGTGGCTGGAGAAGCACACACT
** * * * * *
1632 ACTGCTCACATAATGCAGATCAGACATTTGGACATCATTTTAGCAGATTTAATAATGTACGATGC
66 ACCACTCACACAATGCAGATCAGACAGTTGGACATCATTTCAGCAGATTTAATAATATACAATGC
* *
1697 CAAGTGAGTCAACAAAATGAAAATATAGTTGTGAAAAGAGATAATGCTAGTGGATAAAAGAACAG
131 CAAGTGAGTCAACAAAATGAAAATATAGTTGTGAAAAGAGATAATGCTAGTGGAGAAAACAACAG
***
1762 GACTGTATGTGATGGTCCAGAAAATCATGATGCAACT-AAAACAGCTCCTATGATTGTCTCAAAA
196 GACCACATGTGATGGTCCAGAAAATCATGATGCAACTGAAAA-AGCTCCTATGATTGTCTCAAAA
* * * * *
1826 TTCAACTGCATAAGTGAACCTTCTCA-TGCAAAAAACATGCTGCCTAAAAGGCAAACACAACATG
260 TTCAACCGAAGAAGTGAACCTTCT-AGTGCAAAAAACATACTGCCTAAAAGGCAAACAAAACATG
1890 CATTAAACTCAAGAAATAG
324 CATTAAACTCAAGAAATAG
1909 TG
1 TG
1911 ATGAAAGTGC
Statistics
Matches: 307, Mismatches: 35, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
341 4 0.01
342 302 0.98
343 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (342 bp):
TGGTTTTGGTGATTCAAATAAAGATGCATGCTTTGAAGAAAAAGGTGGCTGGAGAAGCACACACT
ACCACTCACACAATGCAGATCAGACAGTTGGACATCATTTCAGCAGATTTAATAATATACAATGC
CAAGTGAGTCAACAAAATGAAAATATAGTTGTGAAAAGAGATAATGCTAGTGGAGAAAACAACAG
GACCACATGTGATGGTCCAGAAAATCATGATGCAACTGAAAAAGCTCCTATGATTGTCTCAAAAT
TCAACCGAAGAAGTGAACCTTCTAGTGCAAAAAACATACTGCCTAAAAGGCAAACAAAACATGCA
TTAAACTCAAGAAATAG
Done.