Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01280.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3500
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Found at i:1624 original size:6 final size:6

Alignment explanation


    Indices: 1615--1654  Score: 80
    Period size: 6  Copynumber: 6.7  Consensus size: 6

       1605 ATGGAGATGG

                                                          
       1615 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGT
          1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGT

       1655 ATAAATTCAC


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   34  1.00

ACGTcount: A:0.33, C:0.15, G:0.35, T:0.17


Consensus pattern (6 bp):   
AGGTCA

Done.