Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01282.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 946

Length: 1578
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27


Found at i:42 original size:3 final size:3

Alignment explanation


    Indices: 34--63  Score: 60
    Period size: 3  Copynumber: 10.0  Consensus size: 3

         24 TGTATCAGCT

                                                   
         34 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC

         64 AGTTTGTTTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67


Consensus pattern (3 bp):   
TTC

Found at i:366 original size:21 final size:21

Alignment explanation


    Indices: 351--397  Score: 67
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        341 ATGGCTCCGT

                                 
        351 GAAGAGCAACGCTGGCTAAGA
          1 GAAGAGCAACGCTGGCTAAGA

                    *              
        372 GAAGAGCAGCGCTGGCTTAAAGA
          1 GAAGAGCAACGCTGGC-T-AAGA

               
        395 GAA
          1 GAA

        398 AGAATCGCTA


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  21   15  0.65
  22    1  0.04
  23    7  0.30

ACGTcount: A:0.38, C:0.17, G:0.34, T:0.11


Consensus pattern (21 bp):   
GAAGAGCAACGCTGGCTAAGA
Done.