Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02505.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2741
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33


Found at i:196 original size:23 final size:23

Alignment explanation


    Indices: 170--216  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        160 AACGGTATGT

                                   
        170 AGTATGAATTTTGAAATTTACTA
          1 AGTATGAATTTTGAAATTTACTA

                                   
        193 AGTATGAATTTTGAAATTTACTA
          1 AGTATGAATTTTGAAATTTACTA

             
        216 A
          1 A

        217 AAATTCGTAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.40, C:0.04, G:0.13, T:0.43


Consensus pattern (23 bp):   
AGTATGAATTTTGAAATTTACTA
Done.