Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01296.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1909
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:524 original size:9 final size:9

Alignment explanation


    Indices: 510--547  Score: 58
    Period size: 9  Copynumber: 4.2  Consensus size: 9

        500 TTCTTTAGAC

                     
        510 CATCATCAG
          1 CATCATCAG

                     
        519 CATCATCAG
          1 CATCATCAG

                    *
        528 CATCATCAT
          1 CATCATCAG

              *      
        537 CAACATCAG
          1 CATCATCAG

              
        546 CA
          1 CA

        548 GCCTCGGATT


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   9   26  1.00

ACGTcount: A:0.37, C:0.34, G:0.08, T:0.21


Consensus pattern (9 bp):   
CATCATCAG
Done.