Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01308.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1846
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27


Found at i:1645 original size:53 final size:53

Alignment explanation


    Indices: 1582--1690  Score: 218
    Period size: 53  Copynumber: 2.1  Consensus size: 53

       1572 TATCTGTAAA

                                                                 
       1582 AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC
          1 AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC

                                                                 
       1635 AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC
          1 AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC

               
       1688 AAG
          1 AAG

       1691 ATTTTTTTTT


Statistics
Matches: 56,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  53   56  1.00

ACGTcount: A:0.24, C:0.09, G:0.32, T:0.35


Consensus pattern (53 bp):   
AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC
Done.