Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01331.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3934
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32


Found at i:289 original size:44 final size:44

Alignment explanation


    Indices: 239--327  Score: 178
    Period size: 44  Copynumber: 2.0  Consensus size: 44

        229 CTCACTGCTG

                                                        
        239 AGATTGCTCAATTAATCACCACCTCTTTTTAACTGACCAAAACC
          1 AGATTGCTCAATTAATCACCACCTCTTTTTAACTGACCAAAACC

                                                        
        283 AGATTGCTCAATTAATCACCACCTCTTTTTAACTGACCAAAACC
          1 AGATTGCTCAATTAATCACCACCTCTTTTTAACTGACCAAAACC

             
        327 A
          1 A

        328 CCCTATTCTT


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  44   45  1.00

ACGTcount: A:0.35, C:0.29, G:0.07, T:0.29


Consensus pattern (44 bp):   
AGATTGCTCAATTAATCACCACCTCTTTTTAACTGACCAAAACC

Found at i:2079 original size:13 final size:13

Alignment explanation


    Indices: 2061--2085  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2051 CGAATTTGTA

                         
       2061 AAAAATAAAAAAT
          1 AAAAATAAAAAAT

                        
       2074 AAAAATAAAAAA
          1 AAAAATAAAAAA

       2086 ATAACATGTC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12


Consensus pattern (13 bp):   
AAAAATAAAAAAT
Done.