Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01334.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5212
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33


Found at i:1850 original size:222 final size:222

Alignment explanation


    Indices: 1464--1924  Score: 793
    Period size: 222  Copynumber: 2.1  Consensus size: 222

       1454 GTCTTGTTCT

                                                                             
       1464 AAATTGGTTGTGGAAGAGCACACTTGAAATATTAGACCTTTCTTCCAATGCGATTGACATTCCGA
          1 AAATTGGTTGTGGAAGAGCACACTTGAAATATTAGACCTTTCTTCCAATGCGATTGACATTCCGA

                                                                 **         *
       1529 ATCAGTTTCCTTTTGATGATGCAAATTCCTCCTTTCCAATGCTGAGATCGTTGTTTTTGGAATCT
         66 ATCAGTTTCCTTTTGATGATGCAAATTCCTCCTTTCCAATGCTGAGATCGTTGCGTTTGGAATCC

                                                                             
       1594 TGTAATATAAGTACGTTTCCAGCATTTCTAAAGAGTCAAGAGAGCTTAGAAGAACTTGACCTTTC
        131 TGTAATATAAGTACGTTTCCAGCATTTCTAAAGAGTCAAGAGAGCTTAGAAGAACTTGACCTTTC

               *                       
       1659 AAATAACCAAATAAGCGGGGCAGTACC
        196 AAACAACCAAATAAGCGGGGCAGTACC

                                       *                                     
       1686 AAATTGGTTGTGGAAGAGCACACTT-ATAT-TCGTAGACCTTTCTTCCAATGCGATTGACATTCC
          1 AAATTGGTTGTGGAAGAGCACACTTGAAATAT--TAGACCTTTCTTCCAATGCGATTGACATTCC

                                                           **                
       1749 GAATCAGTTTCCTTTTGATGATGCAAATTCCTCCTTTCCAATGCTGATTTCGTTGCGTTT-GAGA
         64 GAATCAGTTTCCTTTTGATGATGCAAATTCCTCCTTTCCAATGCTGAGATCGTTGCGTTTGGA-A

                                                                             
       1813 TCCTGTAATATAAGTACGTTTCCAGCATTTCTAAAGAGTCAAGAGAGCTTAGAAGAACTTGACCT
        128 TCCTGTAATATAAGTACGTTTCCAGCATTTCTAAAGAGTCAAGAGAGCTTAGAAGAACTTGACCT

                                    *     
       1878 TTCAAACAACCAAATAAGCGGGGCCGTACC
        193 TTCAAACAACCAAATAAGCGGGGCAGTACC

                   *         
       1908 AAATTGGGTGTGGAAGA
          1 AAATTGGTTGTGGAAGA

       1925 AAAGTTTGCA


Statistics
Matches: 227,  Mismatches: 9, Indels: 6
        0.94            0.04        0.02

Matches are distributed among these distances:
 220    1  0.00
 221    5  0.02
 222  221  0.97

ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Consensus pattern (222 bp):   
AAATTGGTTGTGGAAGAGCACACTTGAAATATTAGACCTTTCTTCCAATGCGATTGACATTCCGA
ATCAGTTTCCTTTTGATGATGCAAATTCCTCCTTTCCAATGCTGAGATCGTTGCGTTTGGAATCC
TGTAATATAAGTACGTTTCCAGCATTTCTAAAGAGTCAAGAGAGCTTAGAAGAACTTGACCTTTC
AAACAACCAAATAAGCGGGGCAGTACC
Done.