Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01338.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 374

Length: 624
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27


Found at i:304 original size:2 final size:2

Alignment explanation


    Indices: 299--337  Score: 51
    Period size: 2  Copynumber: 19.5  Consensus size: 2

        289 GAGAGAATAC

                      *              *                    *           
        299 GA GA GA GG GA GA GA GA GT GA GA GA GA GA GA GG GA GA GA G
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G

        338 TTGGACTAGA


Statistics
Matches: 31,  Mismatches: 6, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.41, C:0.00, G:0.56, T:0.03


Consensus pattern (2 bp):   
GA

Done.