Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01344.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 409

Length: 683
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35


Found at i:483 original size:18 final size:18

Alignment explanation


    Indices: 460--494  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        450 CGAGCTTATG

                     *        
        460 GTGGTAATGGTGGTTTCC
          1 GTGGTAATGATGGTTTCC

                  *          
        478 GTGGTAGTGATGGTTTC
          1 GTGGTAATGATGGTTTC

        495 GGTAGGGATG


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.11, C:0.09, G:0.40, T:0.40


Consensus pattern (18 bp):   
GTGGTAATGATGGTTTCC
Done.