Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01353.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4729
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33


Found at i:2205 original size:128 final size:129

Alignment explanation


    Indices: 1953--2211  Score: 394
    Period size: 129  Copynumber: 2.0  Consensus size: 129

       1943 AGATATTCTT

                  *           * *                         *                  
       1953 TCCTTAGTTGATTCAATGTTGCATGTATATATAGTTGTACATATTTGTAAGAAATACATACATTG
          1 TCCTTAATTGATTCAATGCTACATGTATATATAGTTGTACATATTTATAAGAAATACATACATTG

                                                              *             
       2018 AGAGAATTTTTCCTCAATACATTAGAGTATTCATCTCTAATTTCATCATGTTATCAGATTTTTA
         66 AGAGAATTTTTCCTCAATACATTAGAGTATTCATCTCTAATTTCATCATGGTATCAGATTTTTA

                          *                        *        *       *    *   
       2082 TCCTTAATTGATTCGATGCTACATGTATATATAGTTGTATATATTTATTAGAAATATATACTTTG
          1 TCCTTAATTGATTCAATGCTACATGTATATATAGTTGTACATATTTATAAGAAATACATACATTG

                 *      *                              *                    
       2147 AGAG-TTTTTTCTTCAATACATTAGAGTATTCATCTCTAATTTTATCATGGTATCAGATTTTTA
         66 AGAGAATTTTTCCTCAATACATTAGAGTATTCATCTCTAATTTCATCATGGTATCAGATTTTTA

              
       2210 TC
          1 TC

       2212 TAATTTTTGA


Statistics
Matches: 117,  Mismatches: 13, Indels: 1
        0.89            0.10        0.01

Matches are distributed among these distances:
 128   57  0.49
 129   60  0.51

ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45


Consensus pattern (129 bp):   
TCCTTAATTGATTCAATGCTACATGTATATATAGTTGTACATATTTATAAGAAATACATACATTG
AGAGAATTTTTCCTCAATACATTAGAGTATTCATCTCTAATTTCATCATGGTATCAGATTTTTA
Done.