Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01362.P4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4213
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:740 original size:3 final size:3

Alignment explanation


    Indices: 734--761  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

        724 GCTCTTTTAT

                                                 
        734 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC T

        762 AATACCATTG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTC

Found at i:1557 original size:105 final size:105

Alignment explanation


    Indices: 1369--1689  Score: 362
    Period size: 105  Copynumber: 3.1  Consensus size: 105

       1359 GATATCGTTT

                          * *     *    *  *    *      *   *               ** 
       1369 CATATAATATATTGATCGATGCACATTACAAGGATGGGAA-GATTTTTGAAG-TAATAGATACCG
          1 CATATAATATATTGGTTGATGCGCATTGCAGGGA-AGGAATGGTTTCTGAAGCTAA-AGATATTG

                        *                             
       1432 TTGACACAATGAAAAAGCAAGGCATTGAGCCTGATGTTGTTA
         64 TTGACACAATGATAAAGCAAGGCATTGAGCCTGATGTTGTTA

             *    *              *      *                    *               
       1474 CGTATATTATATTGGTTGATGTGCATTGTAGGGAAGGAATGGTTTCTGACGCTAAAGATGA-TGT
          1 CATATAATATATTGGTTGATGCGCATTGCAGGGAAGGAATGGTTTCTGAAGCTAAAGAT-ATTGT

              *                           *          
       1538 TGGCACAATGATAAAGCAAGGCATTGAGCCCGATGTTGTTA
         65 TGACACAATGATAAAGCAAGGCATTGAGCCTGATGTTGTTA

                                                                 *           
       1579 CATATAATATATTGGTTGATGCGCATTGCAGGGAAGGAATGGTTTCTGAAGCTGAAGATATTGTT
          1 CATATAATATATTGGTTGATGCGCATTGCAGGGAAGGAATGGTTTCTGAAGCTAAAGATATTGTT

               *    *           *          *         
       1644 GACGCAATAATAAAGCATA-ACATTGAGCCTAATGTTGTTA
         66 GACACAATGATAAAGCA-AGGCATTGAGCCTGATGTTGTTA

             *    
       1684 CCTATA
          1 CATATA

       1690 GTGCATTAAT


Statistics
Matches: 181,  Mismatches: 30, Indels: 10
        0.82            0.14        0.05

Matches are distributed among these distances:
 104    5  0.03
 105  171  0.94
 106    5  0.03

ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31


Consensus pattern (105 bp):   
CATATAATATATTGGTTGATGCGCATTGCAGGGAAGGAATGGTTTCTGAAGCTAAAGATATTGTT
GACACAATGATAAAGCAAGGCATTGAGCCTGATGTTGTTA

Done.