Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01374.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4072
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26


Found at i:3761 original size:75 final size:72

Alignment explanation


    Indices: 3653--3795  Score: 223
    Period size: 75  Copynumber: 1.9  Consensus size: 72

       3643 GATGCGGGTG

                 *                                           *               
       3653 AGTTCCATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCCTTCTACAATGGTGAA
          1 AGTTCAATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCATTCTACAATGGTGAA

                   
       3718 GATGGTA
         66 GATGGTA

                                                                     **      
       3725 AGTTCAATGATGCCAATGATACTGATCAGCAATGGCGACAAGTATTTGAACCATTCTGTAATGGT
          1 AGTTCAATGATGCCAAT--T-CTGATCAGCAATGGCGACAAGTATTTGAACCATTCTACAATGGT

                  
       3790 GAAGAT
         63 GAAGAT

       3796 CATGAGTTAT


Statistics
Matches: 64,  Mismatches: 4, Indels: 3
        0.90            0.06        0.04

Matches are distributed among these distances:
  72   16  0.25
  74    1  0.02
  75   47  0.73

ACGTcount: A:0.32, C:0.17, G:0.22, T:0.28


Consensus pattern (72 bp):   
AGTTCAATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCATTCTACAATGGTGAA
GATGGTA
Done.