Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01374.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4160
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26


Found at i:3941 original size:163 final size:160

Alignment explanation


    Indices: 3653--3975  Score: 538
    Period size: 163  Copynumber: 2.0  Consensus size: 160

       3643 GATGCGGGTG

                 *                                           *               
       3653 AGTTCCATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCCTTCTACAATGGTGAA
          1 AGTTCAATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCATTCTACAATGGTGAA

               **                                                            
       3718 GATGGTGAGTTATCAAAGCTTGAAGAAAACTCATCATGGTTCTCCGGATATGATCGTTGCAATAT
         66 GATCATGAGTTATCAAAGCTTGAAGAAAACTCATCATGGTTCTCCGGATATGATCGTTGCAATAT

                                          
       3783 TTAGATCACACTTAACTGCAGAATCATGTA
        131 TTAGATCACACTTAACTGCAGAATCATGTA

                                                                     **      
       3813 AGTTCAATGATGCCAATGATACTGATCAGCAATGGCGACAAGTATTTGAACCATTCTGTAATGGT
          1 AGTTCAATGATGCCAAT--T-CTGATCAGCAATGGCGACAAGTATTTGAACCATTCTACAATGGT

                                               *                             
       3878 GAAGATCATGAGTTATCAAAGCTTGAAGAAAACTCGTCATGGTTCTCCGGATATGATCGTTGCAA
         63 GAAGATCATGAGTTATCAAAGCTTGAAGAAAACTCATCATGGTTCTCCGGATATGATCGTTGCAA

                        **                   
       3943 TATTTAGATCACGTTTAACTGCAGAATCATGTA
        128 TATTTAGATCACACTTAACTGCAGAATCATGTA

       3976 TGTATACTAA


Statistics
Matches: 151,  Mismatches: 9, Indels: 3
        0.93            0.06        0.02

Matches are distributed among these distances:
 160   16  0.11
 162    1  0.01
 163  134  0.89

ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Consensus pattern (160 bp):   
AGTTCAATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCATTCTACAATGGTGAA
GATCATGAGTTATCAAAGCTTGAAGAAAACTCATCATGGTTCTCCGGATATGATCGTTGCAATAT
TTAGATCACACTTAACTGCAGAATCATGTA
Done.