Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02517.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12128
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35


Found at i:3028 original size:7 final size:7

Alignment explanation


    Indices: 3016--3053  Score: 76
    Period size: 7  Copynumber: 5.4  Consensus size: 7

       3006 TTCAACCGAC

                   
       3016 TTGCTAA
          1 TTGCTAA

                   
       3023 TTGCTAA
          1 TTGCTAA

                   
       3030 TTGCTAA
          1 TTGCTAA

                   
       3037 TTGCTAA
          1 TTGCTAA

                   
       3044 TTGCTAA
          1 TTGCTAA

               
       3051 TTG
          1 TTG

       3054 GAGAATTTCG


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   31  1.00

ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45


Consensus pattern (7 bp):   
TTGCTAA

Found at i:3465 original size:16 final size:15

Alignment explanation


    Indices: 3436--3465  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       3426 TTGGGGTTTT

                           
       3436 TAAAAAATTTATATA
          1 TAAAAAATTTATATA

                           
       3451 TAAAAAATTTA-ATA
          1 TAAAAAATTTATATA

             
       3465 T
          1 T

       3466 GCACGGGCTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    4  0.27
  15   11  0.73

ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40


Consensus pattern (15 bp):   
TAAAAAATTTATATA

Found at i:12006 original size:31 final size:31

Alignment explanation


    Indices: 11968--12033  Score: 132
    Period size: 31  Copynumber: 2.1  Consensus size: 31

      11958 CTTTTCCAAC

                                           
      11968 TTTCATCAGTAGAGGAGAGCACCTATACAAG
          1 TTTCATCAGTAGAGGAGAGCACCTATACAAG

                                           
      11999 TTTCATCAGTAGAGGAGAGCACCTATACAAG
          1 TTTCATCAGTAGAGGAGAGCACCTATACAAG

                
      12030 TTTC
          1 TTTC

      12034 TTTCTTTCTT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   35  1.00

ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26


Consensus pattern (31 bp):   
TTTCATCAGTAGAGGAGAGCACCTATACAAG
Done.