Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01385.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2731
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32


Found at i:2307 original size:21 final size:21

Alignment explanation


    Indices: 2283--2330  Score: 60
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       2273 TCTGTCATGG

                                 
       2283 CCACACGGGCATGTGTCCTTA
          1 CCACACGGGCATGTGTCCTTA

                 *   **         *
       2304 CCACAAGGGTTTGTGTCCTTG
          1 CCACACGGGCATGTGTCCTTA

                  
       2325 CCACAC
          1 CCACAC

       2331 AGTCGTGTCT


Statistics
Matches: 22,  Mismatches: 5, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.19, C:0.33, G:0.23, T:0.25


Consensus pattern (21 bp):   
CCACACGGGCATGTGTCCTTA
Done.