Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01407.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1859
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33


Found at i:1123 original size:105 final size:105

Alignment explanation


    Indices: 977--1397  Score: 456
    Period size: 104  Copynumber: 4.0  Consensus size: 105

        967 ATATTTTTAT

                         * *                *            *     *  *          
        977 ATATAATATATTGATTGATGCACACTT-CAAGGAGGGAATGATTTTTGAAGTTCTAGATATTGTT
          1 ATATAATATATTGGTAGATGCACA-TTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTT

            *        *             *                 
       1041 AACACAATGGGAAAGCAAGGCATCGAGCCTGATGTTGTCAC
         65 GACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC

                 *                *                       *     *            
       1082 ATATAGTATATTGGTAGATGCATATTGCAAGAAGGGAATGATTTCTAAAGCTGAAGATATTGTTG
          1 ATATAATATATTGGTAGATGCACATTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTTG

               **    *     *                        
       1147 ACAGTATGAAAAAGCTAGGCATTGAGCCTGATGTTGTCAC
         66 ACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC

                  *               *         *        *  *        *           
       1187 ATATAACATATTGGTTA-ATGCGCATTGCAAGGAGGGAATGGTTCCT-AAGCTGAAGATATTGTT
          1 ATATAATATATTGG-TAGATGCACATTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTT

                 *              *           *    *   
       1250 GACACGATGAGAAAGCAAGGTATTGAGCCTGACGTTGACAC
         65 GACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC

                  *         *           *        *   *          * *          
       1291 -TCATAGTATATTGGTTGATGCACATTGAAAGAAGGGGATGGTTT-TGAAGCACCAGATATTGTT
          1 AT-ATAATATATTGGTAGATGCACATTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTT

                                          * *        
       1354 GACACAATGAGAAAGCAAGGCATTGAGCCTAAAGTTGTCAC
         65 GACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC

               
       1395 ATA
          1 ATA

       1398 CAACACTCTT


Statistics
Matches: 263,  Mismatches: 47, Indels: 13
        0.81            0.15        0.04

Matches are distributed among these distances:
 103    3  0.01
 104  136  0.52
 105  122  0.46
 106    2  0.01

ACGTcount: A:0.34, C:0.13, G:0.25, T:0.29


Consensus pattern (105 bp):   
ATATAATATATTGGTAGATGCACATTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTTG
ACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC

Done.