Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02518.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3233
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32


Found at i:3111 original size:31 final size:31

Alignment explanation


    Indices: 3073--3138  Score: 132
    Period size: 31  Copynumber: 2.1  Consensus size: 31

       3063 CTTTTCCAAC

                                           
       3073 TTTCATCAGTAGAGGAGAGCACCTATACAAG
          1 TTTCATCAGTAGAGGAGAGCACCTATACAAG

                                           
       3104 TTTCATCAGTAGAGGAGAGCACCTATACAAG
          1 TTTCATCAGTAGAGGAGAGCACCTATACAAG

                
       3135 TTTC
          1 TTTC

       3139 TTTCTTTCTT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   35  1.00

ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26


Consensus pattern (31 bp):   
TTTCATCAGTAGAGGAGAGCACCTATACAAG
Done.