Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g01412.F30
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2032
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Found at i:383 original size:153 final size:150
Alignment explanation
Indices: 103--384 Score: 381
Period size: 153 Copynumber: 1.9 Consensus size: 150
93 TCTGAGTAAA
*
103 ATAGCTTGTGTGTGCTTGCAGCTGCTAGCTTTCAGTTGACTGGATAGGCAATTCTAATCCTGTAA
1 ATAGCTTGTGTGTGCATGCAGCTGCTAGCTTTCAGTTGACTGGATAGGCAATTCTAATCCTGTAA
*
168 AAAAAGAGCCAAATCTTGTGTTTGCAAAAGGTGCACAAGGGGAGCAATTAGGGGATTGGGAGGGG
66 AAAAAGAGCAAAATCTTGTGTTTGCAAAAGGTGCACAAGGGGAGCAATTAGGGGATTGGGAGGGG
233 CCCCATGTCCCCTAAACATG
131 CCCCATGTCCCCTAAACATG
* * * * ** *
253 ATAGCTTGTGTGTGCATGCAGTTGCTAGGTTTTAGTTGATTGGGATAGGCGGTTCTAATCCCTCT
1 ATAGCTTGTGTGTGCATGCAGCTGCTAGCTTTCAGTTGACT-GGATAGGCAATTCTAAT-CCT-G
* * *
318 TAAAAGAAA-AGGAAAAT-TTGGTGTTTGCAAAAGGTGCAGAAGGGGAGCAATT-GGGTGATTTG
63 TAAAA-AAAGAGCAAAATCTT-GTGTTTGCAAAAGGTGCACAAGGGGAGCAATTAGGG-GATTGG
380 GAGGG
125 GAGGG
385 CTTATATTTC
Statistics
Matches: 114, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
150 36 0.32
151 15 0.13
152 8 0.07
153 52 0.46
154 3 0.03
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (150 bp):
ATAGCTTGTGTGTGCATGCAGCTGCTAGCTTTCAGTTGACTGGATAGGCAATTCTAATCCTGTAA
AAAAAGAGCAAAATCTTGTGTTTGCAAAAGGTGCACAAGGGGAGCAATTAGGGGATTGGGAGGGG
CCCCATGTCCCCTAAACATG
Done.