Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01415.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4564
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35


Found at i:3539 original size:22 final size:23

Alignment explanation


    Indices: 3511--3553  Score: 63
    Period size: 22  Copynumber: 1.9  Consensus size: 23

       3501 TACTACTTTA

                                    
       3511 ATTTATG-CAGTTC-TGTTGTTAT
          1 ATTTATGACA-TTCATGTTGTTAT

                                 
       3533 ATTTATGACATTCATGTTGTT
          1 ATTTATGACATTCATGTTGTT

       3554 GGTATCTTCC


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  22   10  0.53
  23    9  0.47

ACGTcount: A:0.21, C:0.09, G:0.16, T:0.53


Consensus pattern (23 bp):   
ATTTATGACATTCATGTTGTTAT

Done.