Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02519.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 419

Length: 699
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:574 original size:7 final size:7

Alignment explanation


    Indices: 562--587  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

        552 TTATCATGCC

                   
        562 AATATTT
          1 AATATTT

                   
        569 AATATTT
          1 AATATTT

                   
        576 AATATTT
          1 AATATTT

                 
        583 AATAT
          1 AATAT

        588 AATTTGCTAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54


Consensus pattern (7 bp):   
AATATTT
Done.