Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01419.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1761
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32


Found at i:611 original size:105 final size:105

Alignment explanation


    Indices: 470--775  Score: 405
    Period size: 105  Copynumber: 2.9  Consensus size: 105

        460 AATATGTTGA

                         *          **             *     ***                 
        470 TTGATGCACATTGCAAGGAGGGGACAATTTCTGAAGCTGTAGATACCATTGACACAATGAGAAAG
          1 TTGATGCACATTGTAAGGAGGGGATGATTTCTGAAGCTGAAGATATTGTTGACACAATGAGAAAG

                                                    
        535 CAAGGCATTGAGCCTAATGTTGTTACATATAGTATATTGG
         66 CAAGGCATTGAGCCTAATGTTGTTACATATAGTATATTGG

                               *         *        *             *       *    
        575 TTGATGCACATTGTAAGGAAGGGATGATTCCTGAAGCTAAAGATATTGTTGAGACAATGATAAAG
          1 TTGATGCACATTGTAAGGAGGGGATGATTTCTGAAGCTGAAGATATTGTTGACACAATGAGAAAG

                                   *  *             
        640 CAAGGCATTGAGCCTAATGTTGTCACGTATAGTATATTGG
         66 CAAGGCATTGAGCCTAATGTTGTTACATATAGTATATTGG

             *       *                *   *                       *      *  *
        680 TCGATGCACTTTGTAAGGAGGGGATGGTTTTTGAAGCTGAAGATATTGTTGACAAAATGAGCAAT
          1 TTGATGCACATTGTAAGGAGGGGATGATTTCTGAAGCTGAAGATATTGTTGACACAATGAGAAAG

                           *          *    
        745 CAAGGCATTGAGCCTGATGTTGTTACCTATA
         66 CAAGGCATTGAGCCTAATGTTGTTACATATA

        776 ATGCATTGAT


Statistics
Matches: 172,  Mismatches: 29, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
 105  172  1.00

ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29


Consensus pattern (105 bp):   
TTGATGCACATTGTAAGGAGGGGATGATTTCTGAAGCTGAAGATATTGTTGACACAATGAGAAAG
CAAGGCATTGAGCCTAATGTTGTTACATATAGTATATTGG
Done.