Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01432.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4726
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32


Found at i:2053 original size:7 final size:7

Alignment explanation


    Indices: 2041--2065  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       2031 ATTTGCCTAC

                   
       2041 TTTTTTA
          1 TTTTTTA

                   
       2048 TTTTTTA
          1 TTTTTTA

                   
       2055 TTTTTTA
          1 TTTTTTA

                
       2062 TTTT
          1 TTTT

       2066 ATTTTGTCAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88


Consensus pattern (7 bp):   
TTTTTTA
Done.