Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01435.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3326
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31


Found at i:3024 original size:55 final size:55

Alignment explanation


    Indices: 2919--3024  Score: 135
    Period size: 55  Copynumber: 1.9  Consensus size: 55

       2909 CAAATTACCG

                                                     ** *          
       2919 CCATCAAGTCCCTATGACAAGTTCTTGAAAGCAGCTGGATTTTTTCAGGTTACTA
          1 CCATCAAGTCCCTATGACAAGTTCTTGAAAGCAGCTGGATTGCTACAGGTTACTA

                              *                            *     
       2974 CCATCAAG-CCCATATGATAAGTTCCTTGAAAGCAGCTGGA-TGCTAGAGGTT
          1 CCATCAAGTCCC-TATGACAAGTT-CTTGAAAGCAGCTGGATTGCTACAGGTT

       3025 GGAGACGTTT


Statistics
Matches: 44,  Mismatches: 5, Indels: 4
        0.83            0.09        0.08

Matches are distributed among these distances:
  54    3  0.07
  55   25  0.57
  56   16  0.36

ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29


Consensus pattern (55 bp):   
CCATCAAGTCCCTATGACAAGTTCTTGAAAGCAGCTGGATTGCTACAGGTTACTA
Done.