Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01438.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 550

Length: 918
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.25


Found at i:97 original size:16 final size:16

Alignment explanation


    Indices: 81--112  Score: 55
    Period size: 16  Copynumber: 1.9  Consensus size: 16

         71 TCAAACGCCT

                             
         81 CTCCACCCCTCCTCCTC
          1 CTCCA-CCCTCCTCCTC

                           
         98 CTCCACCCTCCTCCT
          1 CTCCACCCTCCTCCT

        113 TCTTCCTCAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   10  0.67
  17    5  0.33

ACGTcount: A:0.06, C:0.69, G:0.00, T:0.25


Consensus pattern (16 bp):   
CTCCACCCTCCTCCTC

Found at i:202 original size:24 final size:22

Alignment explanation


    Indices: 162--205  Score: 61
    Period size: 24  Copynumber: 1.9  Consensus size: 22

        152 CACTCTTTCC

                                  
        162 TCTCTCTCCTCTACCACCACCT
          1 TCTCTCTCCTCTACCACCACCT

                          *       
        184 TCTCTCATCCTTCTTCCACCAC
          1 TCTCTC-TCC-TCTACCACCAC

        206 ATCCACAACT


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  22    6  0.32
  23    3  0.16
  24   10  0.53

ACGTcount: A:0.14, C:0.52, G:0.00, T:0.34


Consensus pattern (22 bp):   
TCTCTCTCCTCTACCACCACCT
Done.