Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01439.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1701
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31


Found at i:1638 original size:19 final size:19

Alignment explanation


    Indices: 1614--1652  Score: 69
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1604 ACTAACGTAA

                               
       1614 GTAGAGAGGACCTTTACTT
          1 GTAGAGAGGACCTTTACTT

                      *        
       1633 GTAGAGAGGATCTTTACTT
          1 GTAGAGAGGACCTTTACTT

             
       1652 G
          1 G

       1653 GCATGTATTA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33


Consensus pattern (19 bp):   
GTAGAGAGGACCTTTACTT
Done.