Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g01444.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3594
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Found at i:422 original size:93 final size:93
Alignment explanation
Indices: 300--485 Score: 354
Period size: 93 Copynumber: 2.0 Consensus size: 93
290 TATGGCTTTT
300 TTATTGGAATTATTTTCTAGGTTTTCTTCATTTGATCTTGATTTGTTAGTAAATACTGTAAATTT
1 TTATTGGAATTATTTTCTAGGTTTTCTTCATTTGATCTTGATTTGTTAGTAAATACTGTAAATTT
*
365 GCTGACTTGGAGTGGTTGTTCCTTCTGG
66 GCTGACTTAGAGTGGTTGTTCCTTCTGG
393 TTATTGGAATTATTTTCTAGGTTTTCTTCATTTGATCTTGATTTGTTAGTAAATACTGTAAATTT
1 TTATTGGAATTATTTTCTAGGTTTTCTTCATTTGATCTTGATTTGTTAGTAAATACTGTAAATTT
*
458 GCTGACTTAGAGTGGTTTTTCCTTCTGG
66 GCTGACTTAGAGTGGTTGTTCCTTCTGG
486 GGGTTTTGAC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 91 1.00
ACGTcount: A:0.20, C:0.11, G:0.19, T:0.50
Consensus pattern (93 bp):
TTATTGGAATTATTTTCTAGGTTTTCTTCATTTGATCTTGATTTGTTAGTAAATACTGTAAATTT
GCTGACTTAGAGTGGTTGTTCCTTCTGG
Found at i:1269 original size:32 final size:32
Alignment explanation
Indices: 1228--1290 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
1218 ATAAAAAAGC
1228 TGAAATCAGGGAACGAGATTGGTGCAATGTGT
1 TGAAATCAGGGAACGAGATTGGTGCAATGTGT
1260 TGAAATCAGGGAACGAGATTGGTGCAATGTG
1 TGAAATCAGGGAACGAGATTGGTGCAATGTG
1291 GTTACATGCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.35, T:0.24
Consensus pattern (32 bp):
TGAAATCAGGGAACGAGATTGGTGCAATGTGT
Done.