Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g01445.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3129
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Found at i:422 original size:93 final size:93
Alignment explanation
Indices: 300--485 Score: 354
Period size: 93 Copynumber: 2.0 Consensus size: 93
290 TATGGCTTTT
300 TTATTGGAATTATTTTCTAGGTTTTCTTCATTTGATCTTGATTTGTTAGTAAATACTGTAAATTT
1 TTATTGGAATTATTTTCTAGGTTTTCTTCATTTGATCTTGATTTGTTAGTAAATACTGTAAATTT
*
365 GCTGACTTGGAGTGGTTGTTCCTTCTGG
66 GCTGACTTAGAGTGGTTGTTCCTTCTGG
393 TTATTGGAATTATTTTCTAGGTTTTCTTCATTTGATCTTGATTTGTTAGTAAATACTGTAAATTT
1 TTATTGGAATTATTTTCTAGGTTTTCTTCATTTGATCTTGATTTGTTAGTAAATACTGTAAATTT
*
458 GCTGACTTAGAGTGGTTTTTCCTTCTGG
66 GCTGACTTAGAGTGGTTGTTCCTTCTGG
486 GGGTTTTGAC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 91 1.00
ACGTcount: A:0.20, C:0.11, G:0.19, T:0.50
Consensus pattern (93 bp):
TTATTGGAATTATTTTCTAGGTTTTCTTCATTTGATCTTGATTTGTTAGTAAATACTGTAAATTT
GCTGACTTAGAGTGGTTGTTCCTTCTGG
Found at i:2467 original size:168 final size:167
Alignment explanation
Indices: 2190--2530 Score: 637
Period size: 168 Copynumber: 2.0 Consensus size: 167
2180 CGCATTTGAT
*
2190 TGTGGTATGATCTTCTGCTATATGCTCTTTTATCATTTAAACTTAAATGAAATTTGCAAACTGTC
1 TGTGGTATGATCTTCTGCTATATGCTCTTTTATCATTTAAACTTAAATGAAATTTACAAACTGTC
*
2255 TGATTTTGCATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTCA
66 TAATTTTGCATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTCA
2320 ATAAAAAAGCTGAAATCAGGGAACGAGATTGGTGCAA
131 ATAAAAAAGCTGAAATCAGGGAACGAGATTGGTGCAA
*
2357 TGTGGTATGATCTTCTGCTATATGCTCTTTTATCGTTTAAACTTAAATGAAAATTTACAAACTGT
1 TGTGGTATGATCTTCTGCTATATGCTCTTTTATCATTTAAACTTAAATG-AAATTTACAAACTGT
2422 CTAATTTTGCATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTC
65 CTAATTTTGCATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTC
*
2487 AATAAAAAAGTTGAAATCAGGGAACGAGATTGGTGCAA
130 AATAAAAAAGCTGAAATCAGGGAACGAGATTGGTGCAA
2525 TGTGGT
1 TGTGGT
2531 TACATGCCAT
Statistics
Matches: 169, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
167 48 0.28
168 121 0.72
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (167 bp):
TGTGGTATGATCTTCTGCTATATGCTCTTTTATCATTTAAACTTAAATGAAATTTACAAACTGTC
TAATTTTGCATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTCA
ATAAAAAAGCTGAAATCAGGGAACGAGATTGGTGCAA
Done.