Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01465.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 941

Length: 1569
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33


Found at i:1391 original size:1 final size:1

Alignment explanation


    Indices: 1385--1418  Score: 50
    Period size: 1  Copynumber: 34.0  Consensus size: 1

       1375 TTCGTTGTTC

                     *   *                    
       1385 TTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

       1419 CCATTGTTAT


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   1   29  1.00

ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94


Consensus pattern (1 bp):   
T

Found at i:1401 original size:14 final size:13

Alignment explanation


    Indices: 1382--1418  Score: 58
    Period size: 14  Copynumber: 2.8  Consensus size: 13

       1372 TGGTTCGTTG

                          
       1382 TTCTTTTTTTTTCT
          1 TTCTTTTTTTTT-T

                         
       1396 TTCTTTTTTTTTT
          1 TTCTTTTTTTTTT

                       
       1409 TT-TTTTTTTT
          1 TTCTTTTTTTT

       1419 CCATTGTTAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  12    8  0.35
  13    3  0.13
  14   12  0.52

ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92


Consensus pattern (13 bp):   
TTCTTTTTTTTTT

Done.