Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01467.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2010
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32


Found at i:629 original size:3 final size:3

Alignment explanation


    Indices: 621--670  Score: 73
    Period size: 3  Copynumber: 16.7  Consensus size: 3

        611 ACATATGGAG

                                    *            *            *            
        621 TAA TAA TAA TAA TAA TAA CAA TAA TAA TGA TAA TAA TAT TAA TAA TAA
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA

              
        669 TA
          1 TA

        671 GTCATCGTTC


Statistics
Matches: 41,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   3   41  1.00

ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34


Consensus pattern (3 bp):   
TAA

Done.