Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01478.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3041
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34


Found at i:2888 original size:24 final size:24

Alignment explanation


    Indices: 2839--2888  Score: 57
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       2829 TTAAATGTTA

                         * *   *    
       2839 AATAAGATACTATCTTTTTCCTGT
          1 AATAAGATACTATATGTTTACTGT

                                     
       2863 AATAAGATACT-TATGTTTACTAGT
          1 AATAAGATACTATATGTTTACT-GT

              
       2887 AA
          1 AA

       2889 CAAAGAGGGG


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  23    7  0.32
  24   15  0.68

ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42


Consensus pattern (24 bp):   
AATAAGATACTATATGTTTACTGT
Done.