Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01483.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3704
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35


Found at i:887 original size:16 final size:16

Alignment explanation


    Indices: 856--885  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

        846 ATATATATAT

                            
        856 ATTTTTTAAATATTTA
          1 ATTTTTTAAATATTTA

                           
        872 ATTTTTT-AATATTT
          1 ATTTTTTAAATATTT

        886 TATTATACCC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    7  0.50
  16    7  0.50

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (16 bp):   
ATTTTTTAAATATTTA
Done.