Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01497.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4422
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29


Found at i:1568 original size:153 final size:152

Alignment explanation


    Indices: 1094--1607  Score: 651
    Period size: 153  Copynumber: 3.4  Consensus size: 152

       1084 GTTGAGGTTC

                  *               *                     *                 *  
       1094 TTGAATTGACAGACCATG-CTCGTCTGTCAAGAGAGGCTGCTTCCACGTCTGCATTATCCACCCC
          1 TTGAATCGACAGACCATGTC-CATCTGTCAAGAGAGGCTGCTTCAACGTCTGCATTATCCACACC

            *   *        *                                   *  *         *  
       1158 TAGTAATATAGATGTAGTGGAACCGGTTGCTATAATTCCTTCCTCCAAACATGATGAAACAGAAG
         65 AAGTGATATAGATAT-GTGGAACCGGTTGCTATAATTCCTTCCTCCAAAGATAATGAAACAGGAG

                                    
       1223 TAGCTGCAGCCACAATGACAACCA
        129 TAGCTGCAGCCACAATGACAACCA

                  * *            *                        *          ** **   
       1247 TTGAATTGTCAGACCATGTCCGTCTGTCAAGAGAGGCTGCTTCAACATCTGCATTATTAATGCCA
          1 TTGAATCGACAGACCATGTCCATCTGTCAAGAGAGGCTGCTTCAACGTCTGCATTATCCACACCA

                              *    *                * *             *        
       1312 AGTGATGA-AG--ATGTGAAACCAGTTGCTATAATTCCTTTCGCCAAAGATAATGATACAGGAGT
         66 AGTGAT-ATAGATATGTGGAACCGGTTGCTATAATTCCTTCCTCCAAAGATAATGAAACAGGAGT

                       *            
       1374 AGCCT-CAGCCGCAATGACAACCA
        130 AG-CTGCAGCCACAATGACAACCA

                         *                        *      *                   
       1397 TTGAATCGACAGATCATGTCCATCTGTCAAGAGAGGCTACTTCAATGTCTGCATTATCCACACCA
          1 TTGAATCGACAGACCATGTCCATCTGTCAAGAGAGGCTGCTTCAACGTCTGCATTATCCACACCA

                                             *           *     *             
       1462 AGTGATATAGATACTGTGGAACCGGTTGCTATAGTTCCTTCCTCCGAAGATTATGAAACAGGAGT
         66 AGTGATATAGATA-TGTGGAACCGGTTGCTATAATTCCTTCCTCCAAAGATAATGAAACAGGAGT

                                   
       1527 AGCTGCAGCCACAATGACAACCA
        130 AGCTGCAGCCACAATGACAACCA

              *    *    *                                             
       1550 TTAAATCAACAGGCCATGTCCATCTGTCAAGAGAGGCTGCTTCAACGTCTGCATTATC
          1 TTGAATCGACAGACCATGTCCATCTGTCAAGAGAGGCTGCTTCAACGTCTGCATTATC

       1608 TTCCAACGAA


Statistics
Matches: 308,  Mismatches: 45, Indels: 16
        0.83            0.12        0.04

Matches are distributed among these distances:
 149    1  0.00
 150  123  0.40
 151    3  0.01
 152    3  0.01
 153  176  0.57
 154    2  0.01

ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26


Consensus pattern (152 bp):   
TTGAATCGACAGACCATGTCCATCTGTCAAGAGAGGCTGCTTCAACGTCTGCATTATCCACACCA
AGTGATATAGATATGTGGAACCGGTTGCTATAATTCCTTCCTCCAAAGATAATGAAACAGGAGTA
GCTGCAGCCACAATGACAACCA
Done.