Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01497.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4156
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28


Found at i:1302 original size:153 final size:152

Alignment explanation


    Indices: 828--1341  Score: 651
    Period size: 153  Copynumber: 3.4  Consensus size: 152

        818 GTTGAGGTTC

                  *               *                     *                 *  
        828 TTGAATTGACAGACCATG-CTCGTCTGTCAAGAGAGGCTGCTTCCACGTCTGCATTATCCACCCC
          1 TTGAATCGACAGACCATGTC-CATCTGTCAAGAGAGGCTGCTTCAACGTCTGCATTATCCACACC

            *   *        *                                   *  *         *  
        892 TAGTAATATAGATGTAGTGGAACCGGTTGCTATAATTCCTTCCTCCAAACATGATGAAACAGAAG
         65 AAGTGATATAGATAT-GTGGAACCGGTTGCTATAATTCCTTCCTCCAAAGATAATGAAACAGGAG

                                    
        957 TAGCTGCAGCCACAATGACAACCA
        129 TAGCTGCAGCCACAATGACAACCA

                  * *            *                        *          ** **   
        981 TTGAATTGTCAGACCATGTCCGTCTGTCAAGAGAGGCTGCTTCAACATCTGCATTATTAATGCCA
          1 TTGAATCGACAGACCATGTCCATCTGTCAAGAGAGGCTGCTTCAACGTCTGCATTATCCACACCA

                              *    *                * *             *        
       1046 AGTGATGA-AG--ATGTGAAACCAGTTGCTATAATTCCTTTCGCCAAAGATAATGATACAGGAGT
         66 AGTGAT-ATAGATATGTGGAACCGGTTGCTATAATTCCTTCCTCCAAAGATAATGAAACAGGAGT

                       *            
       1108 AGCCT-CAGCCGCAATGACAACCA
        130 AG-CTGCAGCCACAATGACAACCA

                         *                        *      *                   
       1131 TTGAATCGACAGATCATGTCCATCTGTCAAGAGAGGCTACTTCAATGTCTGCATTATCCACACCA
          1 TTGAATCGACAGACCATGTCCATCTGTCAAGAGAGGCTGCTTCAACGTCTGCATTATCCACACCA

                                             *           *     *             
       1196 AGTGATATAGATACTGTGGAACCGGTTGCTATAGTTCCTTCCTCCGAAGATTATGAAACAGGAGT
         66 AGTGATATAGATA-TGTGGAACCGGTTGCTATAATTCCTTCCTCCAAAGATAATGAAACAGGAGT

                                   
       1261 AGCTGCAGCCACAATGACAACCA
        130 AGCTGCAGCCACAATGACAACCA

              *    *    *                                             
       1284 TTAAATCAACAGGCCATGTCCATCTGTCAAGAGAGGCTGCTTCAACGTCTGCATTATC
          1 TTGAATCGACAGACCATGTCCATCTGTCAAGAGAGGCTGCTTCAACGTCTGCATTATC

       1342 TTCCAACGAA


Statistics
Matches: 308,  Mismatches: 45, Indels: 16
        0.83            0.12        0.04

Matches are distributed among these distances:
 149    1  0.00
 150  123  0.40
 151    3  0.01
 152    3  0.01
 153  176  0.57
 154    2  0.01

ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26


Consensus pattern (152 bp):   
TTGAATCGACAGACCATGTCCATCTGTCAAGAGAGGCTGCTTCAACGTCTGCATTATCCACACCA
AGTGATATAGATATGTGGAACCGGTTGCTATAATTCCTTCCTCCAAAGATAATGAAACAGGAGTA
GCTGCAGCCACAATGACAACCA
Done.