Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01499.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5033
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34


Found at i:980 original size:15 final size:15

Alignment explanation


    Indices: 960--1004  Score: 81
    Period size: 15  Copynumber: 3.0  Consensus size: 15

        950 AAAGATCTGA

                           
        960 ATTTTTTGTCATTTG
          1 ATTTTTTGTCATTTG

                           
        975 ATTTTTTGTCATTTG
          1 ATTTTTTGTCATTTG

                  *        
        990 ATTTTTCGTCATTTG
          1 ATTTTTTGTCATTTG

       1005 CATTCCATGA


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  15   29  1.00

ACGTcount: A:0.13, C:0.09, G:0.13, T:0.64


Consensus pattern (15 bp):   
ATTTTTTGTCATTTG
Done.