Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01507.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5009
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.31


Found at i:121 original size:12 final size:13

Alignment explanation


    Indices: 104--128  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

         94 AACCCTTTTC

                         
        104 TTTTTTCCCCAAT
          1 TTTTTTCCCCAAT

                        
        117 TTTTTTCCCCAA
          1 TTTTTTCCCCAA

        129 ATCAGCTCCC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52


Consensus pattern (13 bp):   
TTTTTTCCCCAAT

Found at i:168 original size:77 final size:78

Alignment explanation


    Indices: 41--217  Score: 256
    Period size: 77  Copynumber: 2.3  Consensus size: 78

         31 ACCCCAAAAA

                                                          *             *    
         41 TTTTTCCCCAAATCAGTTCCCCC-TCTCTCCAAATCCCTAAGTTTTTTTTCCC-GAACCCTTTTC
          1 TTTTTCCCCAAATCAGTTCCCCCTTCTCTCCAAATCCCTAAGTTTTCTTTCCCAG-ACCCCTTTC

                          
        104 TTTTTTCCCCAATT
         65 TTTTTTCCCCAATT

                            *        *                                       
        118 TTTTTCCCCAAATCAGCTCCCCCTTTTC-CCAAAATCCCTAAG-TTTCTTTCCCAGACCCCTTTC
          1 TTTTTCCCCAAATCAGTTCCCCCTTCTCTCC-AAATCCCTAAGTTTTCTTTCCCAGACCCCTTTC

                          
        181 TTTTTTCCCCAATT
         65 TTTTTTCCCCAATT

                           *        
        195 TTTTT-CCCAAATCAATTCCCCCT
          1 TTTTTCCCCAAATCAGTTCCCCCT

        218 CGAAATCCCT


Statistics
Matches: 91,  Mismatches: 6, Indels: 7
        0.88            0.06        0.07

Matches are distributed among these distances:
  76   16  0.18
  77   60  0.66
  78   15  0.16

ACGTcount: A:0.18, C:0.38, G:0.03, T:0.41


Consensus pattern (78 bp):   
TTTTTCCCCAAATCAGTTCCCCCTTCTCTCCAAATCCCTAAGTTTTCTTTCCCAGACCCCTTTCT
TTTTTCCCCAATT

Done.